DNA sequence design for direct-proportional length-based DNA computing: Particle swarm optimization vs population based ant colony optimization

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Abstract

Generally, in DNA computing, the DNA sequences used for the computation should be critically designed in order to reduce error that could occur during computation. Previously, direct-proportional length-based DNA computing which involved DNA sequences with different lengths has been implemented to solve the shortest path problem. In this study, particle swarm optimization (PSO) and population-based ant colony optimization (P-ACO) are employed to design DNA sequences with different lengths and the results obtained are compared. Further comparison with the sequences generated by graph and generate-and-test methods is presented. The results show that P-ACO approach can generate relatively better DNA sequences in some objectives than PSO approach and the other methods. It can be concluded that the P-ACO algorithm can obtain relatively a better set of DNA sequences for DNA computing with length constraints.

Item Type: Conference or Workshop Item (Lecture)
Additional Information: Indexed by Scopus
Uncontrolled Keywords: DNA; sequence design; P-ACO; PSO
Subjects: T Technology > TK Electrical engineering. Electronics Nuclear engineering
Faculty/Division: Faculty of Electrical & Electronic Engineering
Depositing User: Mrs. Neng Sury Sulaiman
Date Deposited: 22 Mar 2020 23:43
Last Modified: 22 Mar 2020 23:43
URI: http://umpir.ump.edu.my/id/eprint/26995
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