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Article

Jaber, Aws Naser and Moorthy, Kohbalan and Machap, Logenthiran and Safaai, Deris (2021) The importance of data classification using machine learning methods in microarray data. Telkomnika, 19 (2). pp. 491-498. ISSN 1693-6930. (Published)

Kauthar, Mohd Daud and Mohd Saberi, Mohamad and Zalmiyah, Zakaria and Rohayanti, Hassan and Zuraini, Ali Shah and Safaai, Deris and Zuwairie, Ibrahim and Suhaimi, Napis and Sinnott, Richard O. (2019) A non-dominated sorting differential search algorithm flux balance analysis (ndsDSAFBA) for in silico multiobjective optimization in identifying reactions knockout. Computers in Biology and Medicine, 113 (103390). pp. 1-2. ISSN 0010-4825. (Published)

Kohbalan, Moorthy and Ali, Mohammed Hasan and Mohd Arfian, Ismail and Chan, Weng Howe and Mohd Saberi, Mohamad and Safaai, Deris (2019) An Evaluation of Machine Learning Algorithms for Missing Values Imputation. International Journal of Innovative Technology and Exploring Engineering (IJITEE), 8 (12S2). pp. 415-420. ISSN 2278-3075. (Published)

Mohammed Falih, Badran and Kohbalan, Moorthy and Nor Saradatul Akmar, Zulkifli and Mohd Saberi, Mohamad and Safaai, Deris and Nan, Md. Sahar (2019) Propose a new Firefly-Fast Learning Network model based Intrusion-Detection System. International Journal of Innovative Technology and Exploring Engineering (IJITEE), 8 (12S2). pp. 146-152. ISSN 2278-3075. (Published)

Muhammad Akmal, Remli and Mohd Saberi, Mohamad and Safaai, Deris and Azurah, A. Samah and Omatu, Sigeru and Corchado, Juan Manuel (2019) Cooperative enhanced scatter search with opposition-based learning schemes for parameter estimation in high dimensional kinetic models of biological systems. Expert Systems with Applications, 116. pp. 131-146. ISSN 0957-4174. (Published)

Muhammad Akmal, Remli and Mohd Saberi, Mohamad and Safaai, Deris and Sinnott, Richard O. and Suhaimi, Napis (2019) An Improved Scatter Search Algorithm for Parameter Estimation in Large-Scale Kinetic Models of Biochemical Systems. Current Proteomics, 16 (5). pp. 425-436. ISSN 1570-1646. (Published)

Muhammad Azharuddin, Arif and Mohd Saberi, Mohamad and Muhammad Shafie, Abd Latif and Safaai, Deris and Muhammad Akmal, Remli and Kauthar, Mohd Daud and Zuwairie, Ibrahim and Omatu, Sigeru and Corchado, Juan Manuel (2018) A hybrid of Cuckoo Search and Minimization of Metabolic Adjustment to optimize metabolites production in genome-scale models. Computers in Biology and Medicine, 102. pp. 112-119. ISSN 0010-4825. (Published)

Ahmad Muhaimin, Ismail and Mohd Saberi, Mohamad and Hairudin, Abdul Majid and Khairul Hamimah, Abas and Safaai, Deris and Zaki, Nazar and Siti Zaiton, Mohd Hashim and Zuwairie, Ibrahim and Muhammad Akmal, Remli (2017) An Improved Hybrid of Particle Swarm Optimization and the Gravitational Search Algorithm to Produce a Kinetic Parameter Estimation of Aspartate Biochemical Pathways. Biosystems, 162. pp. 81-89. ISSN 0303-2647. (Published)

Mohd Arfian, Ismail and Mezhuyev, Vitaliy and Safaai, Deris and Mohd Saberi, Mohamad and Shahreen, Kasim and Saedudin, Rd Rohmat (2017) Multi-objective Optimization of Biochemical System Production Using an Improve Newton Competitive Differential Evolution Method. International Journal on Advanced Science, Engineering and Information Technology, 7 (4-2). pp. 1535-1542. ISSN 2088-5334. (Published)

Nurul Athirah, Nasrudin and Chan, Weng Howe and Mohd Saberi, Mohamad and Safaai, Deris and Suhaimi, Napis and Shahreen, Kasim (2017) Pathway-based analysis with support vector machine (SVM-LASSO) for gene selection and classification. International Journal on Advanced Science, Engineering and Information Technology, 7 (4-2 Special). pp. 1609-1614. ISSN 2088-5334. (Published)

Chan, Weng Howe and Mohd Saberi , Mohamad and Safaai , Deris and Corchado, Juan Manuel and Omatu, Sigeru and Zuwairie, Ibrahim and Shahreen, Kasim (2016) An Improved gSVM-SCADL2 with Firefly Algorithm for Identification of Informative Genes and Pathways. International Journal of Bioinformatics Research and Applications, 12 (1). (Published)

Mohd Arfian, Ismail and Safaai, Deris and Mohd Saberi, Mohamad and Mohd Adham, Isa and Afnizanfaizal, Abdullah and Muhammad Akmal, Remli and Mohi-Aldeen, Shayma Mustafa (2015) A Hybrid of Optimization Method for Multi-Objective Constraint Optimization of Biochemical System Production. Journal of Theoretical and Applied Information Technology, 81 (3). pp. 502-513. ISSN 1992-8645 (print); 817-3195 (online). (Published)

Mohd Arfian, Ismail and Safaai, Deris and Mohd Saberi, Mohamad and Afnizanfaizal, Abdullah (2015) A Newton Cooperative Genetic Algorithm Method for In Silico Optimization of Metabolic Pathway Production. PLoS ONE, 10 (5). pp. 1-19. ISSN 1932-6203. (Published)

Jia, Xing Yeoh and Chuii, Khim Chong and Mohd Saberi, Mohamad and Yee, Wen Choon and Lian, En Chai and Safaai, Deris and Zuwairie, Ibrahim (2015) Parameter Estimation Using Improved Differential Evolution And Bacterial Foraging Algorithms To Model Tyrosine Production In Mus Musculus(Mouse). Jurnal Teknologi (Sciences and Engineering), 72 (1). pp. 49-56. ISSN 0127-9696 (print); 2180-3722 (online). (Published)

Tan, Ching Siang and Ting, Wai Soon and Shahreen, Kasim and Mohd Saberi, Mohamad and Chan, Weng Howe and Safaai, Deris and Zalmiyah, Zakaria and Zuraini, Ali Shah and Zuwairie, Ibrahim (2015) A Review of Cancer Classification Software for Gene Expression Data. International Journal of Bio-Science and Bio-Technology (IJBSBT), 7 (4). pp. 89-108. ISSN 2233-7849. (Published)

Zuwairie, Ibrahim and Swee, Kuan Loha and Swee, Thing Low and Mohd Saberi, Mohamad and Safaai, Deris and Shahreen, Kasim and Choon, Yee Wen and Susilo, Bambang and Hendrawan, Yusuf and Wardani, Agustin Krisna (2015) A Review of Software for Predicting Gene Function. International Journal of Bio-Science and Bio-Technology (IJBSBT), 7 (2). pp. 57-70. ISSN 2233-7849. (Published)

Lim, Sim Yi and Tan, Li Chin and Mohd Saberi, Mohamad and Safaai, Deris and Saad, Subair and Zuwairie, Ibrahim (2015) A Review on Metabolic Pathway Analysis in Biological Production. Mini-Reviews in Organic Chemistry, 13 (6). pp. 506-523. ISSN 1570-193X (print); 1875-6298 (online). (Published)

Mohd Saberi, Mohamad and Sigeru, Omatu and Safaai, Deris and Yoshioka, Michifumi and Afnizanfaizal, Abdullah and Zuwairie, Ibrahim (2013) An enhancement of binary particle swarm optimization for gene selection in classifying cancer classes. Algorithms for Molecular Biology, 8 (15). pp. 1-11. ISSN 1748-7188. (Published)

Book Chapter

Moorthy, Kohbalan and Jaber, Aws Naser and Mohd Arfian, Ismail and Ernawan, Ferda and Mohd Saberi, Mohamad and Safaai, Deris (2019) Missing-values imputation algorithms for microarray gene expression data. In: Microarray Bioinformatics. Methods in Molecular Biology, 1986 . Humana Press, New York, United States, pp. 255-266. ISBN 978-1-4939-9441-0

Aw, Mei Yee and Mohd Saberi, Mohamad and Chong, Chuii Khim and Safaai, Deris and Muhammad Akmal, Remli and Mohd Arfian, Ismail and Corchado, Juan Manuel and Omatu, Sigeru (2019) Parameter estimation of essential amino acids in Arabidopsis thaliana using hybrid of bees algorithm and harmony search. In: Practical Applications of Computational Biology and Bioinformatics, 12th International Conference. Advances in Intelligent Systems and Computing . Springer Verlag, Berlin, Germany, pp. 9-16. ISBN 978-3-319-98702-6

Li, Zhenya and Sinnott, Richard O. and Choon, Yee Wen and Sjaugi, Muhammad Farhan and Mohd Saberi, Mohamad and Safaai, Deris and Suhaimi, Napis and Omatu, Sigeru and Corchado, Juan Manuel and Zuwairie, Ibrahim and Zulkifli, Md. Yusof (2016) Exploring the High Performance Computing-Enablement of a Suite of Gene-Knockout Based Genetic Engineering Applications. In: 10th International Conference on Practical Applications of Computational Biology & Bioinformatics. Advances in Intelligent Systems and Computing, 477 . Springer International Publishing, Switzerland, pp. 133-139. ISBN 978-3-319-40125-6

Nor Syahirah, Abdul Wahid and Mohd Saberi, Mohamad and Abdul Hakim, Mohamed Salleh and Safaai, Deris and Chan, Weng Howe and Omatu, Sigeru and Corchado, Juan Manuel and Muhammad Farhan, Sjaugi and Zuwairie, Ibrahim and Zulkifli, Md. Yusof (2016) A Hybrid of Harmony Search and Minimization of Metabolic Adjustment for Optimization of Succinic Acid Production. In: 10th International Conference on Practical Applications of Computational Biology & Bioinformatics. Advances in Intelligent Systems and Computing, 477 (Pt. IV). Springer, Switzerland, pp. 183-191. ISBN 978-3-319-40125-6 (print); 978-3-319-40126-3 (online)

Sin, Yi Lim and Mohd Saberi, Mohamad and Lian, En Chai and Safaai, Deris and Weng, Howe Chan and Sigeru, Omatu and Muhammad Farhan, Sjaugi and Muhammad Mahfuz, Zainuddin and Gopinathaan, Rajamohan and Zuwairie, Ibrahim and Zulkifli, Md. Yusof (2016) Investigation of the Effects of Imputation Methods for Gene Regulatory Networks Modelling Using Dynamic Bayesian Networks. In: Distributed Computing and Artificial Intelligence, 13th International Conference. Springer International Publishing, pp. 413-421. ISBN 978-3-319-40161-4